PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA01G0217000.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family E2F/DP
Protein Properties Length: 295aa    MW: 32943.6 Da    PI: 10.2538
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA01G0217000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP69.93e-2298174371
            E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse...........dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                        +++Lr +++    + +k+e+ g++t+neva+e+ +e           d+kn+rRR+YD++NVL a+++i+k +k+ei+w+g
  ORGLA01G0217000.1  98 GWGLREFSKI---VSKKVEAkGRTTYNEVADEIFAElksitqnglefDEKNIRRRVYDAFNVLIAIRVIAK-DKKEIKWMG 174
                        689*******...99999999**************************************************.*******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094042.3E-941292IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.107.5E-3694179IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.6E-2496174IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023197.8E-1899174IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.21E-1699175IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144584.79E-29179281IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.7E-31181284No hitNo description
SMARTSM011381.3E-24181291IPR014889Transcription factor DP, C-terminal
PfamPF087818.4E-23182282IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MAPPCGDAAA AASAAPGLAN LLIREGAGLP SRPERYPPFR PCTSDSFAPI SREGDDIPPQ  60
KKSVSLRSGG GGNAAEREEG GANRNGKKEK AGAQRITGWG LREFSKIVSK KVEAKGRTTY  120
NEVADEIFAE LKSITQNGLE FDEKNIRRRV YDAFNVLIAI RVIAKDKKEI KWMGLTNYRY  180
EKIQKLEEVH KELITRIKNK KKLLQEIEKQ FDDLQNITLR NQASQRPAES VNGILLPFLL  240
IKTSRKARVE IEISEDSKFA RFDFNGAPFT MHDDVSILEA IRRNNKGRAG LSIHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-2398175989PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2245290.0AY224529.1 Oryza sativa (japonica cultivar-group) isolate 21044 DP protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631684.10.0PREDICTED: transcription factor-like protein DPB isoform X1
TrEMBLI1NQN00.0I1NQN0_ORYGL; Uncharacterized protein
STRINGORGLA01G0217000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.12e-54Transcription factor DP